| MultiComparator(EntryGroup[], ComparisonData[], InputStreamProgressListener) |  | 0% |  | 0% | 20 | 20 | 130 | 130 | 1 | 1 |
| makeMenus() |  | 0% |  | 0% | 5 | 5 | 93 | 93 | 1 | 1 |
| makeFileMenu() |  | 0% |  | 0% | 11 | 11 | 79 | 79 | 1 | 1 |
| loadBamAndVcf(List, List, int) |  | 0% |  | 0% | 4 | 4 | 33 | 33 | 1 | 1 |
| rotateSequences() |  | 0% |  | 0% | 3 | 3 | 16 | 16 | 1 | 1 |
| saveEntry(Entry) |  | 0% |  | 0% | 3 | 3 | 18 | 18 | 1 | 1 |
| closeComparator() |  | 0% |  | 0% | 7 | 7 | 14 | 14 | 1 | 1 |
| printMenu() |  | 0% | | n/a | 1 | 1 | 10 | 10 | 1 | 1 |
| readAnEntry(EntrySource, EntryGroup) |  | 0% |  | 0% | 2 | 2 | 11 | 11 | 1 | 1 |
| makeGotoEventSourceArray() |  | 0% |  | 0% | 2 | 2 | 6 | 6 | 1 | 1 |
| loadFromProperty(int) |  | 0% |  | 0% | 2 | 2 | 5 | 5 | 1 | 1 |
| makeSelectionArray() |  | 0% |  | 0% | 2 | 2 | 5 | 5 | 1 | 1 |
| makeNewSubMenuName(EntryGroup) |  | 0% |  | 0% | 3 | 3 | 7 | 7 | 1 | 1 |
| getDefaultFont() | | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
| getEntryGroupArray() | | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
| getComparisonDataArray() | | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
| getAlignmentViewerArray() | | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
| getFeatureDisplayArray() | | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
| getSelectionArray() | | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
| getGotoEventSourceArray() | | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
| getBasePlotGroupArray() | | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
| getBamPanelArray() | | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |
| getVcfPanelArray() | | 0% | | n/a | 1 | 1 | 1 | 1 | 1 | 1 |