| Element | Missed Instructions | Cov. | Missed Branches | Cov. | Missed | Cxty | Missed | Lines | Missed | Methods | Missed | Classes |
| Total | 11,645 of 20,054 | 41% | 1,387 of 2,001 | 30% | 1,013 | 1,419 | 2,202 | 3,767 | 187 | 401 | 18 | 81 |
| VCFview.java | 26% | 10% | 296 | 356 | 795 | 1,097 | 77 | 127 | 6 | 36 | ||
| IOUtils.java | 47% | 42% | 174 | 251 | 323 | 663 | 14 | 32 | 0 | 1 | ||
| VCFFilter.java | 52% | 15% | 147 | 178 | 245 | 472 | 16 | 36 | 0 | 14 | ||
| GraphPanel.java | 8% | 3% | 58 | 65 | 173 | 194 | 13 | 19 | 1 | 4 | ||
| VCFRecord.java | 37% | 25% | 60 | 94 | 106 | 199 | 15 | 40 | 0 | 1 | ||
| PrintVCFview.java | 0% | 0% | 21 | 21 | 122 | 122 | 15 | 15 | 4 | 4 | ||
| RecordFilter.java | 7% | 4% | 33 | 36 | 62 | 71 | 2 | 5 | 0 | 1 | ||
| BCFReader.java | 72% | 62% | 53 | 111 | 79 | 264 | 3 | 26 | 0 | 3 | ||
| AbstractVCFReader.java | 58% | 52% | 26 | 56 | 63 | 151 | 3 | 19 | 0 | 1 | ||
| TableViewer.java | 0% | 0% | 15 | 15 | 60 | 60 | 9 | 9 | 4 | 4 | ||
| TabixReader.java | 81% | 61% | 60 | 125 | 44 | 223 | 4 | 32 | 0 | 5 | ||
| FilteredPanel.java | 43% | 18% | 13 | 20 | 47 | 93 | 6 | 12 | 1 | 2 | ||
| MultipleAlleleVariant.java | 67% | 26% | 29 | 37 | 14 | 33 | 1 | 3 | 0 | 1 | ||
| CDSFeature.java | 0% | 0% | 5 | 5 | 37 | 37 | 3 | 3 | 1 | 1 | ||
| VariantBase.java | 66% | 55% | 14 | 29 | 17 | 47 | 1 | 10 | 0 | 1 | ||
| FeatureContigPredicate.java | 0% | 0% | 4 | 4 | 9 | 9 | 2 | 2 | 1 | 1 | ||
| HeaderLine.java | 90% | 80% | 5 | 16 | 6 | 32 | 3 | 11 | 0 | 1 |